This is based off of https://www.thingiverse.com/thing:2815318.

The bottom layer is very similar though I made the walls a bit thicker and added a lid to the resources. Also the bottom of the bins are now rounded this makes getting pieces out of the bottom easier and makes the junction stronger.

This layout has a box per player with all the houses, meeples and buildings in one tray. This makes gameplay much easier as you don't need to reach for a central pool of buildings every round.

Print

1 X Pollution

1 x Fields

2 X Misc box // This has 2 boxes per print so its 4 total

4 X PlayerBox

2 X Resources

Though I called two of the boxes pollution and fields. Each has 2 bins so I would make each have pollution and Fields in them that way you can put them at different areas of the table so everyone has easy access.

In the player box put one of each building plus 4 fishing docks. The fields box has space for the storage and carts buildings but due to the height restriction of getting all three layers it wont fit all of them so you need to through a couple in the player bins.